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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15795978_15799892_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15795978 - 15799892
Intron Length:
3915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTATTCTTAAGT
Flanking Amino Acid:
GNIVKWLKKEGETVNAGDAL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
86
0.81
0.8
81
36
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
69.2
0.68
1.6
81.23
40.2

Associated Gene:

Gene:
PDHX
Ensembl Gene ID:
ENSAPLG00000011686
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012236
15770136 - 15807049
36914