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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15814964_15816246_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15814964 - 15816246
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TATAAAATATCT
Flanking Amino Acid:
PLFMNAYTMRGAGAVIHTHS
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.7
41.2
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
85
0.79
0.6
84.9
22.7
Minor 5ss
34.4
-1.8
3
45.9
42.2
Minor BPS
42.5
-0.4
2.2
65.94
43.4

Associated Gene:

Gene:
APIP
Ensembl Gene ID:
ENSAPLG00000011642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031454
15807147 - 15822340
15194
ENSAPLT00000012123
15807147 - 15822340
15194