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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15819419_15821274_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15819419 - 15821274
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATACCTTAATT
Flanking Amino Acid:
WGETWEKAKTMYLPTWEFQI
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.5
0.66
0.8
73.6
30.4
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
77.7
0.95
1.2
84.84
35.1

Associated Gene:

Gene:
APIP
Ensembl Gene ID:
ENSAPLG00000011642
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031454
15807147 - 15822340
15194