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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_158299_159273_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158299 - 159273
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
DDELKHLILRAADGFLFVVG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
65.7
0.35
1
65.3
39.8
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
ARNTL
Ensembl Gene ID:
ENSAPLG00000003885
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004089
143668 - 169868
26201