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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1587195_1589006_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1587195 - 1589006
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATACTCAATT
Flanking Amino Acid:
CLVPASGGSQKLFSLGAGDR
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.2
0.82
0.7
80.7
30.7
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
64.8
0.54
1.7
82.6
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030482
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027765
1515891 - 1610801
94911