About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15883017_15886057_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15883017 - 15886057
Intron Length:
3041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAATTTACAAAT
Flanking Amino Acid:
SMTTPSHQPPDSSDVKKTQD
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
74.8
35.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.3
0.79
0.7
80.4
24.9
Minor 5ss
32.7
-2
3.1
39.8
40.4
Minor BPS
44.2
-0.3
1.7
59.01
37.3

Associated Gene:

Gene:
EHF
Ensembl Gene ID:
ENSAPLG00000011349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011835
15878368 - 15911587
33220