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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15886287_15888560_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15886287 - 15888560
Intron Length:
2274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TTGTCCTTTACC
Flanking Amino Acid:
HNVIVKTEQTDPSLMVSWKE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
81.2
0.7
0.8
77.9
29.7
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
76.2
0.81
1.6
82.88
37.2

Associated Gene:

Gene:
EHF
Ensembl Gene ID:
ENSAPLG00000011349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011835
15878368 - 15911587
33220