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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15888621_15888945_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15888621 - 15888945
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAGA
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTTCATATCT
Flanking Amino Acid:
YSNLQHLKWNGQCGSDMYQS
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.1
37.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.7
0.8
0.8
80.6
31.5
Minor 5ss
34.6
-1.8
2.8
39.5
40.9
Minor BPS
52.9
0.17
1.9
73.15
43.6

Associated Gene:

Gene:
EHF
Ensembl Gene ID:
ENSAPLG00000011349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011835
15878368 - 15911587
33220