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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15889192_15891852_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15889192 - 15891852
Intron Length:
2661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AGATGTTTAATA
Flanking Amino Acid:
SWTDGYSTCNVSSSFYGTQW
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
58.8
40.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
28.5
-2.5
3.5
35
43.4
Minor BPS
56
0.19
1.7
63.09
37.4

Associated Gene:

Gene:
EHF
Ensembl Gene ID:
ENSAPLG00000011349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011835
15878368 - 15911587
33220