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Intron Name: Anas_platyrhynchos_platyrhynchos_5_159354_162004_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

159354 - 162004

Intron Length:

2651

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

CACAAATTAAGT

Flanking Amino Acid:

MAVQHMKTLRGATNPYTEAN

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

76.8

34.8

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

85.8

0.81

0.7

85.6

29.2

Minor 5ss

39.7

-1.2

2.8

46.7

43.9

Minor BPS

43.3

-0.4

56.01

45.5

Associated Gene:

Gene:

ARNTL

Ensembl Gene ID:

ENSAPLG00000003885

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004089

143668 - 169868

26201