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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15943389_15953109_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15943389 - 15953109
Intron Length:
9721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
AAATATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTGCCAAATA
Flanking Amino Acid:
CCFRSKRLPTNSDSFWTSIH
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.5
36.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
66.8
0.38
1.1
58.7
45.9
Minor 5ss
46.8
-0.3
2.7
60.7
37.9
Minor BPS
46
-0.3
2.3
63.3
43.7

Associated Gene:

Gene:
ELF5
Ensembl Gene ID:
ENSAPLG00000011073
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046343
15943145 - 15958314
15170
ENSAPLT00000027090
15943145 - 15958314
15170