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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15957626_15958217_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15957626 - 15958217
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTTTCTCCATTG
Flanking Amino Acid:
MTYEKLSRALRYYYKTGILE
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.7
29.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
34.5
-1.8
2.8
40.8
45.4
Minor BPS
43.1
-0.6
2
51.74
43.5

Associated Gene:

Gene:
ELF5
Ensembl Gene ID:
ENSAPLG00000011073
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027090
15943145 - 15958314
15170
ENSAPLT00000011536
15947348 - 15958314
10967
ENSAPLT00000046343
15943145 - 15958314
15170