About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15976083_15976557_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15976083 - 15976557
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGTTCTGAATA
Flanking Amino Acid:
DKYNAESGKKDVIKTYTQAT
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.4
30.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.2
0.68
0.8
78.4
34.8
Minor 5ss
38.4
-1.3
3
49.1
47.1
Minor BPS
69
0.59
1.4
75.63
36

Associated Gene:

Gene:
CAT
Ensembl Gene ID:
ENSAPLG00000010432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010911
15976017 - 15988693
12677
ENSAPLT00000048208
15976017 - 15988664
12648
ENSAPLT00000019689
15975572 - 15988664
13093