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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15979870_15981159_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15979870 - 15981159
Intron Length:
1290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GATCTATTAATG
Flanking Amino Acid:
IEPSPDKMLQGRLFAYADTH
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.3
0.48
1.1
74.9
38.9
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
51.5
-0
1.6
55.99
39

Associated Gene:

Gene:
CAT
Ensembl Gene ID:
ENSAPLG00000010432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048208
15976017 - 15988664
12648
ENSAPLT00000019689
15975572 - 15988664
13093
ENSAPLT00000010911
15976017 - 15988693
12677