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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15982516_15983996_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15982516 - 15983996
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TCATTGCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTCATT
Flanking Amino Acid:
KAVYCKFHVKTDQGIKNLSV
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.1
0.59
0.9
73.7
36.7
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
69.2
0.69
1.7
85.82
34.8

Associated Gene:

Gene:
CAT
Ensembl Gene ID:
ENSAPLG00000010432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019689
15975572 - 15988664
13093
ENSAPLT00000010911
15976017 - 15988693
12677