About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15982516_15985001_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15982516 - 15985001
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TCATTGCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTCATT
Flanking Amino Acid:
WSLRPESLHQTDQGIKNLSV
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.1
0.59
0.9
73.7
36.7
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
69.2
0.69
1.7
85.82
34.8

Associated Gene:

Gene:
CAT
Ensembl Gene ID:
ENSAPLG00000010432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048208
15976017 - 15988664
12648