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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15985107_15985955_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15985107 - 15985955
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTGACAAATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
CTCCCCCTGACA
Flanking Amino Acid:
PIFFIRDAMLFPSFIHSQKR
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
51.8
0.04
1
49.3
38
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
54.4
0.13
1.7
64.84
41.4

Associated Gene:

Gene:
CAT
Ensembl Gene ID:
ENSAPLG00000010432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048208
15976017 - 15988664
12648
ENSAPLT00000019689
15975572 - 15988664
13093
ENSAPLT00000010911
15976017 - 15988693
12677