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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15987650_15988429_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15987650 - 15988429
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAATG
Flanking Amino Acid:
PERVVHAKGAGAFGYFEVTH
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.9
0.83
0.8
85.1
34.9
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
62.9
0.27
1.7
67.77
40.4

Associated Gene:

Gene:
CAT
Ensembl Gene ID:
ENSAPLG00000010432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048208
15976017 - 15988664
12648
ENSAPLT00000019689
15975572 - 15988664
13093
ENSAPLT00000010911
15976017 - 15988693
12677