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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15988602_15988666_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15988602 - 15988666
Intron Length:
65

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATACTGACTT
Flanking Amino Acid:
MSCDTTVDQRPDVLTTGAG
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
69.5
41.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.8
0.83
0.7
84.4
23.4
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
48.6
-0
1.9
68.3
42.1

Associated Gene:

Gene:
CAT
Ensembl Gene ID:
ENSAPLG00000010432
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010911
15976017 - 15988693
12677