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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1605723_1606427_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1605723 - 1606427
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTGTCCTTTACA
Flanking Amino Acid:
SVFRNDIHELLDVIIADLDG
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
85.9
0.81
0.8
80.2
31.9
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
76.6
0.83
1.6
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030482
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027765
1515891 - 1610801
94911