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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1606542_1607146_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1606542 - 1607146
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
AAAAATTCTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTATTTTAAAA
Flanking Amino Acid:
LHQTQMALSLVLHPDLETAD
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
76
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.2
0.21
1
48.5
44.6
Minor 5ss
64.3
0.48
2.2
76.9
32.6
Minor BPS
63.7
0.43
1.4
71.38
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030482
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027765
1515891 - 1610801
94911