Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1609204_1609742_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1609204 - 1609742

Intron Length:

539

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACAG

5'SS Class:

major

3'SS Sequence:

ATCTCTAATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

CTATCTCTAATG

Flanking Amino Acid:

HAEPVIHFHKAAFLGQRGLI

Intron Amino Acid Position:

382

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

64.9

Major BPS

82.2

0.8

0.9

81.6

Major PPT

72.8

0.51

67.2

37.6

Minor 5ss

30.7

-2.2

3.1

38.3

46.6

Minor BPS

55.3

0.03

1.8

60.51

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027765

1515891 - 1610801

94911