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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16112899_16142534_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16112899 - 16142534
Intron Length:
29636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTGATGTTAATT
Flanking Amino Acid:
DPPRMTLNNERPFMLLPPLM
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.3
0.55
0.9
68.9
36.2
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
49.4
0.03
2.1
67.41
44.2

Associated Gene:

Gene:
ABTB2
Ensembl Gene ID:
ENSAPLG00000008248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008605
16022343 - 16164211
141869