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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16142688_16147882_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16142688 - 16147882
Intron Length:
5195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
TTATCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCCTTTACA
Flanking Amino Acid:
PGLDCEPRQLKPECCFSSFR
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
67.8
37.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.8
80.4
31.4
Minor 5ss
39.9
-1.1
3.1
48.4
45.8
Minor BPS
77.4
0.86
1.5
84.59
34.8

Associated Gene:

Gene:
ABTB2
Ensembl Gene ID:
ENSAPLG00000008248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008605
16022343 - 16164211
141869