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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16148049_16151494_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16148049 - 16151494
Intron Length:
3446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAC
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
CTTTTCCTGAAG
Flanking Amino Acid:
PDGVNTMDDQGMTPLMYACA
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65
41.2
Major BPS
62.2
0.3
1
59
38
Major PPT
78
0.63
1
79.7
26.3
Minor 5ss
44.3
-0.6
2.8
58.6
46.2
Minor BPS
49
-0.2
1.9
59.87
42

Associated Gene:

Gene:
ABTB2
Ensembl Gene ID:
ENSAPLG00000008248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008605
16022343 - 16164211
141869