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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16152174_16153792_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16152174 - 16153792
Intron Length:
1619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTGTCTTTAATG
Flanking Amino Acid:
VLHGHISVVQLLLDAGAHVE
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.5
0.57
1
69.1
41.8
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
77
0.71
1.2
74.76
38.2

Associated Gene:

Gene:
ABTB2
Ensembl Gene ID:
ENSAPLG00000008248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008605
16022343 - 16164211
141869