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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16158174_16158702_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16158174 - 16158702
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATCATA
5'SS Class:
major
3'SS Sequence:
GTCCTCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TCCTCCTTACAG
Flanking Amino Acid:
LMFDILKTSKNDSINQQLAS
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
73.6
37
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.3
0.66
0.8
72.2
32.5
Minor 5ss
44.7
-0.6
2.8
58
40.7
Minor BPS
55.8
0.04
1.9
60.06
47.5

Associated Gene:

Gene:
ABTB2
Ensembl Gene ID:
ENSAPLG00000008248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008605
16022343 - 16164211
141869