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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16159784_16161594_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16159784 - 16161594
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCTTCCCATTT
Flanking Amino Acid:
ISDMKYNIFKMLMQYLYYGG
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
81
0.7
0.8
77.7
29.4
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
45.8
-0.2
2
68.16
43.2

Associated Gene:

Gene:
ABTB2
Ensembl Gene ID:
ENSAPLG00000008248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008605
16022343 - 16164211
141869