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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16162658_16164013_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16162658 - 16164013
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTGATCTTACTC
Flanking Amino Acid:
NSVNIYKYAKIHNAPELASF
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
56.8
0.19
1.6
66.1
40.2

Associated Gene:

Gene:
ABTB2
Ensembl Gene ID:
ENSAPLG00000008248
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008605
16022343 - 16164211
141869