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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16173275_16174446_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16173275 - 16174446
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGGGAA
5'SS Class:
major
3'SS Sequence:
TCCTGTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAC
Flanking Amino Acid:
GQNASIVSVKSEKKRKLEAA
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
70.4
35.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.5
0.66
0.8
71.8
38.1
Minor 5ss
24.9
-2.9
3.2
29.3
43.4
Minor BPS
61.8
0.35
1.4
68.78
36.2

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799