Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16174531_16176960_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16174531 - 16176960

Intron Length:

2430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGAACT

5'SS Class:

major

3'SS Sequence:

CCTTTTCACTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTTTCCTTTACC

Flanking Amino Acid:

VVKLKEMDLTQYIIRGDDEE

Intron Amino Acid Position:

961

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

72.2

37.3

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

0.54

0.8

73.6

30.3

Minor 5ss

38.3

-1.3

3.1

56.8

Minor BPS

83.2

1.03

1.4

91.21

28.8

Associated Gene:

Gene:

NAT10

Ensembl Gene ID:

ENSAPLG00000007638

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008019

16172483 - 16195281

22799