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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16177527_16178602_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16177527 - 16178602
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTTATTTCATT
Flanking Amino Acid:
FNRIIRKVVQLFNTVQEKAV
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.1
33.8
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
55.5
0.25
1.9
77.31
39.6

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799