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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16178723_16179245_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16178723 - 16179245
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
GCCTCTCTAACT
Flanking Amino Acid:
GDISLSAAQSALLLGIGLQH
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.3
36.1
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
75.5
0.57
0.9
72.9
37.3
Minor 5ss
46.9
-0.3
2.5
63.7
40.8
Minor BPS
60
0.39
1.7
72.99
44

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799