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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16180796_16181424_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16180796 - 16181424
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTTCATTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTATTA
Flanking Amino Acid:
FVPVYLRQTPNDLTGEHSCI
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75.1
0.56
0.9
75.1
33.5
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
59.4
0.29
1.9
72.26
40.2

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799