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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16181474_16183366_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16181474 - 16183366
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTCTCTTATCC
Flanking Amino Acid:
VSYGLTPRLLKFWKRAGFVP
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.9
38
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.7
0.65
0.7
72.8
32.1
Minor 5ss
36.3
-1.6
3.2
50.3
39.7
Minor BPS
69.1
0.58
1.6
79.51
35.5

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799