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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16183805_16184220_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16183805 - 16184220
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCATAATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATAATT
Flanking Amino Acid:
RIAVHPDYQGMGYGSRALNL
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
84.2
33.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72
0.49
0.9
65.1
39.8
Minor 5ss
40.6
-1.1
3
51.6
45.1
Minor BPS
68.6
0.66
1.6
84.28
36.7

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799