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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16184296_16184408_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16184296 - 16184408
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTACTTTAAAT
Flanking Amino Acid:
DLIPWTISEQFQDPDFGGLS
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
85.5
24.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.9
0.63
0.9
72.4
36.8
Minor 5ss
31.3
-2.1
2.9
41.5
45.1
Minor BPS
70.7
0.73
1.4
83.09
37.4

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799