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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16186379_16186835_R

Intron Information:

Intron Rank:
13
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
16186379 - 16186835
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATCCTTA
5'SS Class:
strong_minor
3'SS Sequence:
ACCCTGTGTTTAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GTTTCCTTAACC
Flanking Amino Acid:
SGCPLPETCDLYYVNRDTLF
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.4
-0
1.3
51.9
41.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
63.8
0.31
1
61.2
39.5
Minor 5ss
91.8
1.41
1
90.9
28.7
Minor BPS
91
1.27
0.8
91.71
27.5

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799