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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16186987_16187399_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16186987 - 16187399
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCAAT
5'SS Class:
major
3'SS Sequence:
AATCTGTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CTTCTCTGAAAT
Flanking Amino Acid:
KSTATAKLTSARTLHEVSLH
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
70.9
40.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
76.7
0.6
0.9
69.6
40.7
Minor 5ss
40
-1.1
3.2
57.6
46.7
Minor BPS
58.5
0.35
1.6
75.47
40.7

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799