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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16187525_16188039_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16187525 - 16188039
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
ATTTGCTTCAGG
Flanking Amino Acid:
YLVFMASTINGYEGTGRSLS
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
46.9
-0.3
2.5
61.17
46.7

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799