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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16188177_16188709_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16188177 - 16188709
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAGA
5'SS Class:
major
3'SS Sequence:
TCATTCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CATTCCTTACAG
Flanking Amino Acid:
VFKEHRQTIQYIHPADSVKL
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.9
43.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.7
0.74
0.8
76.6
31.9
Minor 5ss
44.3
-0.6
2.7
58.2
46
Minor BPS
56.9
0.08
1.9
61.76
45.7

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799