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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16188809_16189087_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16188809 - 16189087
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TACTGGTTAACA
Flanking Amino Acid:
FKGFDALQYQEHLDYEIVQS
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
50.4
0.01
2.4
68.06
44.4

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799