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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16190594_16191909_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16190594 - 16191909
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTGTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATCTTTTAAAT
Flanking Amino Acid:
NITPVPPRSQEDSLRPQDLE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.9
0.49
0.9
65
40.8
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
62.4
0.47
1.3
74.15
35.9

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799