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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16192025_16192796_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16192025 - 16192796
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGACTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTGCCTTTACT
Flanking Amino Acid:
HQDVVGRFNERFILSLASCK
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
68.2
0.41
1
65.2
40.8
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
75.4
0.88
1.7
92.33
36.7

Associated Gene:

Gene:
NAT10
Ensembl Gene ID:
ENSAPLG00000007638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008019
16172483 - 16195281
22799