About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16203336_16204219_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16203336 - 16204219
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTATACTT
Flanking Amino Acid:
APRDYSNYQRDGYQQNFKRG
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.3
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.8
82.7
33.3
Minor 5ss
43.7
-0.7
2.9
50.6
46.1
Minor BPS
50.9
0.11
1.8
74.24
37.2

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034318
16202134 - 16234272
32139
ENSAPLT00000019087
16202134 - 16234272
32139
ENSAPLT00000007313
16202134 - 16234272
32139