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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16204321_16205520_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16204321 - 16205520
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAGC
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCATTTCTAAGT
Flanking Amino Acid:
GYRGPANGFRGGYDGYRPSF
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.2
0.75
0.6
80.1
25.5
Minor 5ss
39.1
-1.2
3
52.1
44.7
Minor BPS
49.1
0.01
1.9
68.42
42.9

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034318
16202134 - 16234272
32139
ENSAPLT00000019087
16202134 - 16234272
32139
ENSAPLT00000007313
16202134 - 16234272
32139