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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16205716_16207650_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16205716 - 16207650
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGAAATATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TTTTCCCCACTT
Flanking Amino Acid:
SDLQQEQLQTVVGTYHGSPD
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
62.3
0.28
1
55.4
43.7
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
52.1
0.14
2.1
81.02
40.9

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034318
16202134 - 16234272
32139
ENSAPLT00000019087
16202134 - 16234272
32139
ENSAPLT00000007313
16202134 - 16234272
32139