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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16211121_16212041_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16211121 - 16212041
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
QMQGPYNFMQDSMLEFENQT
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034318
16202134 - 16234272
32139
ENSAPLT00000019087
16202134 - 16234272
32139
ENSAPLT00000007313
16202134 - 16234272
32139