About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16212198_16216642_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16212198 - 16216642
Intron Length:
4445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTACTC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTTCTTACTA
Flanking Amino Acid:
TEPTEVESTEVVNSLQQQTQ
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
64.4
39.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.5
0.6
0.9
71.1
39.6
Minor 5ss
42.7
-0.8
3.1
59.9
44.6
Minor BPS
66.9
0.53
1.6
75.34
36.5

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019087
16202134 - 16234272
32139