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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_16220103_16220211_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16220103 - 16220211
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
AATTCTGTTATT
Flanking Amino Acid:
LVYPERDMSVRLNEQYEQAS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
74.1
0.54
1.1
72
42.4
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
48.1
-0
2.2
70.85
40.9

Associated Gene:

Gene:
CAPRIN1
Ensembl Gene ID:
ENSAPLG00000006975
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007313
16202134 - 16234272
32139
ENSAPLT00000034318
16202134 - 16234272
32139
ENSAPLT00000019087
16202134 - 16234272
32139